Metadegradome atlas

Generated with fivepseq version 1.2

(K) Bacteria

(P) Actinobacteria
- (C) Actinobacteria
  - (O) Bifidobacteriales
    - (F) Bifidobacteriaceae
      - (G) Gardnerella
        
        (S) Gardnerella vaginalis
        
        mapped to: Gardnerella vaginalis 409-05 RNJA RNY RNE RNG RNEG
(P) Bacteroidetes
- (C) Bacteroidia
  - (O) Bacteroidales
    - (F) Bacteroidaceae
      - (G) Bacteroides
        
        (S) Bacteroides fragilis
        
        mapped to: Bacteroides fragilis YCH46 RNJA RNY RNE RNG RNEG
        
        (S) Bacteroides thetaiotaomicron
        
        mapped to: Bacteroides thetaiotaomicron VPI-5482 RNJA RNY RNE RNG RNEG
        
        (S) Bacteroides uniformis
        
        mapped to: Bacteroides uniformis ATCC 8492 RNJA RNY RNE RNG RNEG
        
        (S) Bacteroides ovatus
        
        mapped to: Bacteroides ovatus RNJA RNY RNE RNG RNEG
    - (F) Bacteroidales incertae sedis
      - (G) Phocaeicola
        
        (S) Phocaeicola vulgatus
        
        mapped to: Bacteroides vulgatus ATCC 8482 RNJA RNY RNE RNG RNEG
    - (F) Prevotellaceae
      - (G) Prevotella
        
        (S) Prevotella amnii
        
        mapped to: Prevotella amnii DSM 23384 = JCM 14753 RNJA RNY RNE RNG RNEG
        
        (S) Prevotella buccalis
        
        mapped to: Prevotella buccalis ATCC 35310 RNJA RNY RNE RNG RNEG
        
        (S) Prevotella copri
        
        Prevotella copri Indica RNJA RNY RNE RNG RNEG
        
        (S) Prevotella timonensis
        
        Prevotella timonensis DSM 22865 RNJA RNY RNE RNG RNEG
    - (F) Rikenellaceae
      - (G) Alistipes
        
        (S) Alistipes finegoldii
        
        Alistipes finegoldii DSM 17242 RNJA RNY RNE RNG RNEG
    - (F) Tannerellaceae
      - (G) Parabacteroides
        
        (S) Parabacteroides distasonis
        
        mapped to: Parabacteroides distasonis ATCC 8503 RNJA RNY RNE RNG RNEG
        
        (S) Parabacteroides merdae
        
        Parabacteroides merdae RNJA RNY RNE RNG RNEG
(P) Cyanobacteria
- (C) -
  - (O) Synechococcales
    - (F) Merismopediaceae
      - (G) Geminocystis
        
        (S) unclassified Synechocystis
        
        Synechocystis sp. PCC 6803 (cyanobacteria) RNJA RNY RNE RNG RNEG
(P) Firmicutes
- (C) Bacilli
  - (O) Bacillales
    - (F) Bacillaceae
      - (G) Bacillus
        
        (S) Bacillus amyloliquefaciens
        
        Bacillus amyloliquefaciens DSM 7 = ATCC 23350 RNJA RNY RNE RNG RNEG
        
        (S) Bacillus subtilis
        
        Bacillus subtilis subsp. subtilis str. 168 RNJA RNY RNE RNG RNEG
  - (O) Lactobacillales
    - (F) Enterococcaceae
      - (G) Enterococcus
        
        (S) Enterococcus devriesei
        
        mapped to: Enterococcus devriesei RNJA RNY RNE RNG RNEG
        
        (S) Enterococcus faecalis
        
        mapped to: Enterococcus faecalis V583 RNJA RNY RNE RNG RNEG
        
        (S) Enterococcus faecium
        
        mapped to: Enterococcus faecium DO RNJA RNY RNE RNG RNEG
    - (F) Lactobacillaceae
      - (G) Lactobacillus
        
        (S) Lactobacillus fermentum
        
        mapped to: Lactobacillus fermentum IFO 3956 RNJA RNY RNE RNG RNEG
        
        (S) Lactobacillus iners
        
        mapped to: Lactobacillus iners DSM 13335 RNJA RNY RNE RNG RNEG
        
        (S) Lactobacillus plantarum
        
        Lactobacillus plantarum WCFS1 RNJA RNY RNE RNG RNEG
        
        (S) Lactobacillus reuteri
        
        Lactobacillus reuteri DSM 20016 RNJA RNY RNE RNG RNEG
    - (F) Streptococcaceae
      - (G) Streptococcus
        
        (S) Streptococcus anginosus
        
        mapped to: Streptococcus anginosus RNJA RNY RNE RNG RNEG
- (C) Clostridia
  - (O) Clostridiales
    - (F) Lachnospiraceae
      - (G) Dorea
        
        (S) Dorea formicigenerans
        
        mapped to: Dorea formicigenerans ATCC 27755 RNJA RNY RNE RNG RNEG
      - (G) Anaerostipes
        
        (S) Anaerostipes caccae
        
        mapped to: Anaerostipes caccae L1-92 RNJA RNY RNE RNG RNEG
      - (G) Enterocloster
        
        (S) Enterocloster bolteae
        
        mapped to: [Clostridium] bolteae 90A9 RNJA RNY RNE RNG RNEG
        
        (S) Enterocloster citroniae
        
        mapped to: [Clostridium] citroniae WAL-17108 RNJA RNY RNE RNG RNEG
      - (G) Lachnoclostridium
        
        (S) [Clostridium] symbiosum
        
        mapped to: [Clostridium] symbiosum WAL-14163 (firmicutes) RNJA RNY RNE RNG RNEG
  - (O) Eubacteriales
    - (F) Clostridiaceae
      - (G) Clostridium
        
        (S) Clostridium butyricum
        
        mapped to: Clostridium butyricum RNJA RNY RNE RNG RNEG
        
        (S) Clostridium tyrobutyricum
        
        mapped to: Clostridium tyrobutyricum RNJA RNY RNE RNG RNEG
      - (G) Hungatella
        
        (S) Hungatella hathewayi
        
        mapped to: Hungatella hathewayi DSM 13479 RNJA RNY RNE RNG RNEG
    - (F) Eubacteriaceae
      - (G) Pseudoramibacter
        
        (S) Pseudoramibacter alactolyticus
        
        mapped to: Pseudoramibacter alactolyticus ATCC 23263 RNJA RNY RNE RNG RNEG
    - (F) Eubacteriales incertae sedis
      - (G) Mogibacterium
        
        (S) Mogibacterium timidum
        
        mapped to: Mogibacterium timidum RNJA RNY RNE RNG RNEG
    - (F) Lachnospiraceae
      - (G) Dorea
        
        (S) Dorea formicigenerans
        
        mapped to: Dorea formicigenerans ATCC 27755 RNJA RNY RNE RNG RNEG
      - (G) Anaerostipes
        
        (S) Anaerostipes caccae
        
        mapped to: Anaerostipes caccae L1-92 RNJA RNY RNE RNG RNEG
      - (G) Enterocloster
        
        (S) Enterocloster bolteae
        
        mapped to: [Clostridium] bolteae 90A9 RNJA RNY RNE RNG RNEG
        
        (S) Enterocloster citroniae
        
        mapped to: [Clostridium] citroniae WAL-17108 RNJA RNY RNE RNG RNEG
      - (G) Lachnoclostridium
        
        (S) [Clostridium] symbiosum
        
        mapped to: [Clostridium] symbiosum WAL-14163 (firmicutes) RNJA RNY RNE RNG RNEG
    - (F) Oscillospiraceae
      - (G) Flavonifractor
        
        (S) Flavonifractor plautii
        
        mapped to: Flavonifractor plautii RNJA RNY RNE RNG RNEG
- (C) Negativicutes
  - (O) Veillonellales
    - (F) Veillonellaceae
      - (G) Anaeroglobus
        
        (S) Anaeroglobus geminatus
        
        mapped to: Anaeroglobus geminatus F0357 RNJA RNY RNE RNG RNEG
      - (G) Megasphaera
        
        (S) Megasphaera genomosp. type_1
        
        mapped to: Megasphaera genomosp. type_1 str. 28L RNJA RNY RNE RNG RNEG
(P) Fusobacteria
- (C) Fusobacteriia
  - (O) Fusobacteriales
    - (F) Leptotrichiaceae
      - (G) Sneathia
        
        (S) Sneathia sanguinegens
        
        mapped to: Sneathia sanguinegens RNJA RNY RNE RNG RNEG
(P) Proteobacteria
- (C) Alphaproteobacteria
  - (O) Caulobacterales
    - (F) Caulobacteraceae
      - (G) Caulobacter
        
        (S) Caulobacter vibrioides
        
        Caulobacter vibrioides CB15 RNJA RNY RNE RNG RNEG
- (C) Gammaproteobacteria
  - (O) Enterobacterales
    - (F) Enterobacteriaceae
      - (G) Escherichia
        
        (S) Escherichia coli
        
        Escherichia coli str. K-12 substr. MG1655 RNJA RNY RNE RNG RNEG